Some methods of GALAMOST are developed partically based on the codes from other packages. To acknowledge the original works, we list the methods of GALAMOST and their original sources.
|ENUF electrostatics||MDynaMix (CPU codes, GNU License )|
|Tabulated potential method||IBIsCO (CPU codes, GNU License )|
|MD-SCF||OCCAM (CPU codes, GNU License )|
|Gay-Berne model||LAMMPS (CPU codes, GNU License )|
|Virtual interaction sites||GROMACS (CPU codes, GNU License )|
|Bond constraint LINCS||GROMACS (CPU codes, GNU License )|
|Rigid body||LAMMPS (CPU codes, GNU License) and HOOMD (GPU codes, BSD-3 License)|
|PPPM electrostatics||HOOMD (GPU codes, BSD-3 License)|
|MTK barostat||HOOMD (GPU codes, BSD-3 License)|
|Neighbor List on auto parameter (>=4.0.1)||HOOMD (GPU codes, BSD-3 License)|
The licenses of source packages that are inluded in GALAMOST codes are listed here for clarity.
BSD 3-Clause License for HOOMD-blue Copyright (c) 2009-2019 The Regents of the University of Michigan All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, firstname.lastname@example.org Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License.
See the README file in the top-level LAMMPS directory. Copyright (c) 1996, 1999, 2006 by: Alexander Lyubartsev and Aatto Laaksonen, Department of Physical Chemistry, Stockholm University All rights reserved
GROMACS is free software, distributed under the GNU Lesser General Public License (LGPL) Version 2.1 or (at your option) any later version. See section 1 for details. GROMACS includes optional code covered by several different licences as described below. The GROMACS package in its entirety may be copied, modified or distributed according to the conditions described in section 1. However, in the interests of clarity and completeness, some individual parts of GROMACS that can be used under their respective licenses are also noted here.