Original sourcesΒΆ

Some methods of GALAMOST are developed partically based on the codes from other packages. To acknowledge the original works, we list the methods of GALAMOST and their original sources.

Methods Sources
ENUF electrostatics MDynaMix (CPU codes, GNU License )
Tabulated potential method IBIsCO (CPU codes, GNU License )
MD-SCF OCCAM (CPU codes, GNU License )
Gay-Berne model LAMMPS (CPU codes, GNU License )
Virtual interaction sites GROMACS (CPU codes, GNU License )
Bond constraint LINCS GROMACS (CPU codes, GNU License )
Rigid body LAMMPS (CPU codes, GNU License) and HOOMD (GPU codes, BSD-3 License)
PPPM electrostatics HOOMD (GPU codes, BSD-3 License)
MTK barostat HOOMD (GPU codes, BSD-3 License)
Neighbor List on auto parameter (>=4.0.1) HOOMD (GPU codes, BSD-3 License)

The licenses of source packages that are inluded in GALAMOST codes are listed here for clarity.

HOOMD-blue:

BSD 3-Clause License for HOOMD-blue
Copyright (c) 2009-2019 The Regents of the University of Michigan All rights reserved.

Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:


1. Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.


 2. Redistributions in binary form must reproduce the above copyright notice,
    this list of conditions and the following disclaimer in the documentation
    and/or other materials provided with the distribution.


 3. Neither the name of the copyright holder nor the names of its contributors
    may be used to endorse or promote products derived from this software without
    specific prior written permission.


THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

LAMMPS:

LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator

http://lammps.sandia.gov, Sandia National Laboratories

Steve Plimpton, sjplimp@sandia.gov



Copyright (2003) Sandia Corporation.  Under the terms of Contract

DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains

certain rights in this software.  This software is distributed under

the GNU General Public License.

MDynaMix:

See the README file in the top-level LAMMPS directory.


              Copyright (c) 1996, 1999, 2006 by:
           Alexander Lyubartsev and Aatto Laaksonen,
      Department of Physical Chemistry, Stockholm University

                     All rights reserved

GROMACS:

GROMACS is free software, distributed under the GNU Lesser General
Public License (LGPL) Version 2.1 or (at your option) any later
version. See section 1 for details. GROMACS includes optional code
covered by several different licences as described below.  The
GROMACS package in its entirety may be copied, modified or
distributed according to the conditions described in section 1.
However, in the interests of clarity and completeness, some
individual parts of GROMACS that can be used under their respective
licenses are also noted here.